PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G034400.1
Common NamePHAVU_006G034400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 89aa    MW: 10151.7 Da    PI: 10.2749
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G034400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.14.2e-322878151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey++
  Phvul.006G034400.1 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYAN 78
                        79***********************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-422079IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.8242080IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-302083IPR002100Transcription factor, MADS-box
CDDcd002651.57E-402179No hitNo description
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-342242IPR002100Transcription factor, MADS-box
PfamPF003191.2E-272976IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-344257IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-345778IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MLQTMELPNQ AQEGSSQKKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EVALVVFSSR GRLYEYANNR LYQHTNPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-222081162Myocyte-specific enhancer factor 2B
1tqe_Q3e-222081162Myocyte-specific enhancer factor 2B
1tqe_R3e-222081162Myocyte-specific enhancer factor 2B
1tqe_S3e-222081162Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-133AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146364.11e-60hypothetical protein PHAVU_006G034400g
SwissprotP293817e-40AGL1_ARATH; Agamous-like MADS-box protein AGL1
SwissprotQ408857e-40AG_PETHY; Floral homeotic protein AGAMOUS
SwissprotQ435858e-40AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLV7BMU31e-60V7BMU3_PHAVU; Uncharacterized protein
STRINGGLYMA18G12590.22e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.26e-42MIKC_MADS family protein